haplo::haplo_DP_rectangle Struct Reference

#include <haplotypes.hpp>

Public Member Functions
	haplo_DP_rectangle ()
	haplo_DP_rectangle (bool inclusive_interval)
void	set_offset (int offset)
template<class accessorType>
void	false_extend (accessorType &ga, int_itvl_t delta)
template<class GBWTType>
void	extend (hDP_gbwt_graph_accessor< GBWTType > &ga)
int64_t	I () const
int64_t	interval_size () const
void	set_prev_idx (int64_t index)
int64_t	prev_idx () const
bool	is_new () const
void	calculate_I (int64_t succ_o_val)

Public Attributes
double	R

Private Types
typedef pair< size_t, size_t >	gen_range_t
typedef size_t	gen_flat_node

Private Attributes
int64_t	inner_value
gen_range_t	state = make_pair(1, 0)
gen_flat_node	flat_node
int64_t	previous_index = -1
bool	int_is_inc

Member Typedef Documentation

gen_flat_node

typedef size_t haplo::haplo_DP_rectangle::gen_flat_node

private

gen_range_t

typedef pair<size_t, size_t> haplo::haplo_DP_rectangle::gen_range_t

private

Constructor & Destructor Documentation

haplo_DP_rectangle() [1/2]

haplo::haplo_DP_rectangle::haplo_DP_rectangle

(

)

haplo_DP_rectangle() [2/2]

haplo::haplo_DP_rectangle::haplo_DP_rectangle

(

bool

inclusive_interval

)

Member Function Documentation

calculate_I()

void haplo::haplo_DP_rectangle::calculate_I

(

int64_t

succ_o_val

)

extend()

template<class GBWTType>

void haplo::haplo_DP_rectangle::extend

(

hDP_gbwt_graph_accessor< GBWTType > &

ga

)

false_extend()

template<class accessorType>

void haplo::haplo_DP_rectangle::false_extend	(	accessorType &	ga,
		int_itvl_t	delta )

I()

int64_t haplo::haplo_DP_rectangle::I

(

)

const

interval_size()

int64_t haplo::haplo_DP_rectangle::interval_size

(

)

const

is_new()

bool haplo::haplo_DP_rectangle::is_new

(

)

const

prev_idx()

int64_t haplo::haplo_DP_rectangle::prev_idx

(

)

const

set_offset()

void haplo::haplo_DP_rectangle::set_offset

(

int

offset

)

set_prev_idx()

void haplo::haplo_DP_rectangle::set_prev_idx

(

int64_t

index

)

Member Data Documentation

flat_node

gen_flat_node haplo::haplo_DP_rectangle::flat_node

private

inner_value

int64_t haplo::haplo_DP_rectangle::inner_value

private

int_is_inc

bool haplo::haplo_DP_rectangle::int_is_inc

private

previous_index

int64_t haplo::haplo_DP_rectangle::previous_index = -1

private

R

double haplo::haplo_DP_rectangle::R

state

gen_range_t haplo::haplo_DP_rectangle::state = make_pair(1, 0)

private

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The documentation for this struct was generated from the following files:

• src/haplotypes.hpp
• src/haplotypes.cpp