vg
tools for working with variation graphs
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Here is a list of all functions with links to the classes they belong to:
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_
~
- b -
b() :
vg::uniform_int_distribution< T >
,
vg::uniform_real_distribution< T >
BABuilder() :
vg::BandedGlobalAligner< IntType >::BABuilder
back() :
haplo::gbwt_thread_t
back_translate_alignments_in_place() :
vg::BackTranslatingAlignmentEmitter
backing_index() :
vg::VectorView< Item >
BackTranslatingAlignmentEmitter() :
vg::BackTranslatingAlignmentEmitter
badness() :
vg::Haplotypes::Subchain
BAMatrix() :
vg::BandedGlobalAligner< IntType >::BAMatrix
BandedGlobalAligner() :
vg::BandedGlobalAligner< IntType >
base_edge() :
vg::AugmentedGraph
base_seed_length() :
vg::algorithms::Anchor
BaseArgSpec() :
vg::subcommand::BaseArgSpec< Receiver >
BaseMapper() :
vg::BaseMapper
BaseOption() :
vg::BaseOption< Value, Parser >
BaseValuation() :
vg::subcommand::BaseValuation
begin() :
vg::Option< vector< Item >, Parser >
,
vg::PathIndex
,
vg::PhasedGenome
,
vg::ShuffledPairs
,
vg::VectorView< Item >
,
vg::ZipCodeTree
bfs() :
vg::FlowSort
bfs_left() :
vg::RepresentativeTraversalFinder
bfs_right() :
vg::RepresentativeTraversalFinder
bin_for_position() :
vg::Packer
bin_to_prefix() :
vg::StreamIndexBase
binary_extend_intervals() :
haplo::haplo_DP_column
BitString() :
vg::BitString
bp_length() :
vg::RepresentativeTraversalFinder
break_chain() :
vg::GraphCaller
break_cycles() :
vg::VG
brute_force_alt_traversals() :
vg::VCFTraversalFinder
build_edge_indexes() :
vg::VG
build_edge_indexes_no_init_size() :
vg::VG
build_gbwt() :
vg::HaplotypeIndexer
build_indexes() :
vg::SnarlManager
,
vg::VG
build_indexes_no_init_size() :
vg::VG
build_indices() :
vg::PhasedGenome
build_node_indexes() :
vg::VG
build_node_indexes_no_init_size() :
vg::VG
build_position_table() :
vg::Translator
build_site_indices_internal() :
vg::PhasedGenome
build_subchains() :
vg::HaplotypePartitioner
byte_count() :
vg::varint_vector_t
,
vg::ZipCode
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